Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 AC006333.2-201ENST00000607957 2099 ntBASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 HOXB1-202ENST00000577092 1414 ntBASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 AL391807.1-203ENST00000604392 2365 ntBASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 AL161938.1-201ENST00000569833 2180 ntBASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PAAF1Q9BRP4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PAAF1Q9BRP4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.02■□□□□ 0.79
PAAF1Q9BRP4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PAAF1Q9BRP4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
PAAF1Q9BRP4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 DUSP5P1-201ENST00000441325 1139 ntBASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 AC104390.1-201ENST00000555663 520 ntBASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 AL136038.4-201ENST00000603606 1261 ntBASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 AC010240.3-201ENST00000607688 395 ntBASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 NPAP1P7-201ENST00000613027 823 ntBASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PAAF1Q9BRP4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 AL162741.1-201ENST00000565563 1558 ntBASIC20■□□□□ 0.79
PAAF1Q9BRP4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 KRT18P48-201ENST00000434763 852 ntBASIC20■□□□□ 0.79
PAAF1Q9BRP4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 AC011498.5-201ENST00000592027 486 ntBASIC20■□□□□ 0.79
PAAF1Q9BRP4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PAAF1Q9BRP4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PAAF1Q9BRP4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms