Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AL023284.2-201ENST00000405850 579 ntBASIC14.53□□□□□ -0.08
CCDC140Q96MF4 SLC25A1P2-201ENST00000430693 912 ntBASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 C2orf69P3-201ENST00000565542 1120 ntBASIC14.53□□□□□ -0.08
CCDC140Q96MF4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 MIR4674-201ENST00000582457 87 ntBASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AL023803.3-201ENST00000615559 522 ntBASIC14.53□□□□□ -0.08
CCDC140Q96MF4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 AL357033.4-201ENST00000617703 1807 ntBASIC14.52□□□□□ -0.08
CCDC140Q96MF4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 KRT8P9-201ENST00000558927 1449 ntBASIC14.52□□□□□ -0.08
CCDC140Q96MF4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC140Q96MF4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 MCCD1P1-208ENST00000445732 328 ntBASIC14.52□□□□□ -0.09
CCDC140Q96MF4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC140Q96MF4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 AP003041.3-201ENST00000527151 707 ntBASIC14.51□□□□□ -0.09
CCDC140Q96MF4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms