Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCHCR1Q8TD31 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
CCHCR1Q8TD31 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCHCR1Q8TD31 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCHCR1Q8TD31 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CCHCR1Q8TD31 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CCHCR1Q8TD31 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 AP006294.2-201ENST00000641667 209 ntBASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.57■□□□□ 0.72
CCHCR1Q8TD31 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.56■□□□□ 0.72
CCHCR1Q8TD31 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.55■□□□□ 0.72
CCHCR1Q8TD31 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms