Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 AL355075.4-201ENST00000554988 638 ntBASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 AP000525.1-201ENST00000608286 694 ntBASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 FITM1-202ENST00000559294 800 ntBASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 AC008622.2-201ENST00000617006 1229 ntBASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC65Q8IXS2 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 AC093827.2-201ENST00000512654 315 ntBASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC65Q8IXS2 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC65Q8IXS2 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 MIR1238-201ENST00000408483 83 ntBASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC65Q8IXS2 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 AL109659.2-201ENST00000606809 1674 ntBASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 AL390955.1-201ENST00000428694 934 ntBASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 AC066615.1-201ENST00000640911 628 ntBASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms