Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC13.29□□□□□ -0.28
RPL39P62891 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
RPL39P62891 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 AP006587.1-201ENST00000534129 1502 ntBASIC13.29□□□□□ -0.28
RPL39P62891 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.29□□□□□ -0.28
RPL39P62891 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 SNAI3-AS1-205ENST00000568633 2096 ntBASIC13.29□□□□□ -0.28
RPL39P62891 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
RPL39P62891 ZNRF2P3-201ENST00000424200 374 ntBASIC13.29□□□□□ -0.28
RPL39P62891 AC034268.1-201ENST00000441047 882 ntBASIC13.29□□□□□ -0.28
RPL39P62891 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC13.29□□□□□ -0.28
RPL39P62891 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC13.29□□□□□ -0.28
RPL39P62891 ISCU-212ENST00000547005 795 ntTSL 3 BASIC13.29□□□□□ -0.28
RPL39P62891 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 AC005181.1-201ENST00000604782 1256 ntBASIC13.29□□□□□ -0.28
RPL39P62891 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC13.29□□□□□ -0.28
RPL39P62891 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
RPL39P62891 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RPL39P62891 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.29□□□□□ -0.28
RPL39P62891 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC13.29□□□□□ -0.28
RPL39P62891 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
RPL39P62891 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RPL39P62891 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPL39P62891 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC13.28□□□□□ -0.28
RPL39P62891 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
RPL39P62891 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
RPL39P62891 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC13.28□□□□□ -0.28
RPL39P62891 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 YBX1P10-201ENST00000444752 975 ntBASIC13.28□□□□□ -0.28
RPL39P62891 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC13.28□□□□□ -0.28
RPL39P62891 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC13.28□□□□□ -0.28
RPL39P62891 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
RPL39P62891 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC13.28□□□□□ -0.28
RPL39P62891 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC13.28□□□□□ -0.28
RPL39P62891 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
RPL39P62891 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RPL39P62891 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
RPL39P62891 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC13.28□□□□□ -0.28
RPL39P62891 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.27□□□□□ -0.28
RPL39P62891 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
RPL39P62891 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
RPL39P62891 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPL39P62891 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
RPL39P62891 AC134043.2-201ENST00000624206 2238 ntBASIC13.27□□□□□ -0.28
RPL39P62891 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.28
RPL39P62891 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms