Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC13.14□□□□□ -0.31
CKS1BP61024 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 AL162412.1-201ENST00000567129 965 ntBASIC13.14□□□□□ -0.31
CKS1BP61024 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC13.14□□□□□ -0.31
CKS1BP61024 AC010536.3-201ENST00000620306 533 ntBASIC13.14□□□□□ -0.31
CKS1BP61024 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 AC013268.1-206ENST00000638368 961 ntBASIC13.14□□□□□ -0.31
CKS1BP61024 AC112229.1-201ENST00000639295 961 ntBASIC13.14□□□□□ -0.31
CKS1BP61024 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.14□□□□□ -0.31
CKS1BP61024 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.14□□□□□ -0.31
CKS1BP61024 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 COMP-202ENST00000425807 2292 ntTSL 2 BASIC13.14□□□□□ -0.31
CKS1BP61024 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CKS1BP61024 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CKS1BP61024 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CKS1BP61024 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 AL365209.1-201ENST00000624418 6473 ntBASIC13.13□□□□□ -0.31
CKS1BP61024 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CKS1BP61024 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC13.13□□□□□ -0.31
CKS1BP61024 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 GAS2L1P2-201ENST00000436355 1356 ntBASIC13.13□□□□□ -0.31
CKS1BP61024 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC13.13□□□□□ -0.31
CKS1BP61024 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 MFSD11-216ENST00000590393 1141 ntBASIC13.13□□□□□ -0.31
CKS1BP61024 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CKS1BP61024 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
CKS1BP61024 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC13.13□□□□□ -0.31
CKS1BP61024 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CKS1BP61024 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.13□□□□□ -0.31
CKS1BP61024 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CKS1BP61024 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS1BP61024 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CKS1BP61024 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 AC063926.3-201ENST00000624734 5658 ntBASIC13.12□□□□□ -0.31
CKS1BP61024 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CKS1BP61024 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
CKS1BP61024 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC13.12□□□□□ -0.31
CKS1BP61024 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 MCRIP2P1-201ENST00000394346 511 ntBASIC13.12□□□□□ -0.31
CKS1BP61024 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS1BP61024 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms