Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.1■□□□□ 0.81
VCPP55072 KRT8P8-201ENST00000434750 1448 ntBASIC20.1■□□□□ 0.81
VCPP55072 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VCPP55072 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.1■□□□□ 0.81
VCPP55072 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.1■□□□□ 0.81
VCPP55072 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.09■□□□□ 0.81
VCPP55072 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
VCPP55072 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
VCPP55072 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.09■□□□□ 0.81
VCPP55072 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.09■□□□□ 0.81
VCPP55072 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.09■□□□□ 0.81
VCPP55072 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.09■□□□□ 0.81
VCPP55072 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.09■□□□□ 0.81
VCPP55072 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.09■□□□□ 0.81
VCPP55072 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.09■□□□□ 0.81
VCPP55072 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
VCPP55072 AC138932.1-201ENST00000534164 6830 ntBASIC20.09■□□□□ 0.81
VCPP55072 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
VCPP55072 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
VCPP55072 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
VCPP55072 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCPP55072 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.08■□□□□ 0.81
VCPP55072 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.08■□□□□ 0.81
VCPP55072 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.08■□□□□ 0.81
VCPP55072 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.08■□□□□ 0.81
VCPP55072 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.08■□□□□ 0.81
VCPP55072 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.08■□□□□ 0.81
VCPP55072 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.08■□□□□ 0.81
VCPP55072 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.08■□□□□ 0.81
VCPP55072 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.08■□□□□ 0.81
VCPP55072 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.81
VCPP55072 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCPP55072 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCPP55072 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
VCPP55072 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCPP55072 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCPP55072 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.08■□□□□ 0.8
VCPP55072 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCPP55072 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCPP55072 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCPP55072 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
VCPP55072 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
VCPP55072 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
VCPP55072 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.07■□□□□ 0.8
VCPP55072 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
VCPP55072 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
VCPP55072 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.07■□□□□ 0.8
VCPP55072 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
VCPP55072 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.07■□□□□ 0.8
VCPP55072 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.07■□□□□ 0.8
VCPP55072 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
VCPP55072 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.07■□□□□ 0.8
VCPP55072 RN7SL510P-201ENST00000581311 263 ntBASIC20.07■□□□□ 0.8
VCPP55072 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VCPP55072 AC004263.2-201ENST00000617183 678 ntBASIC20.07■□□□□ 0.8
VCPP55072 AC131212.4-201ENST00000623606 975 ntBASIC20.07■□□□□ 0.8
VCPP55072 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.07■□□□□ 0.8
VCPP55072 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 ZNF815P-204ENST00000434898 1737 ntBASIC20.07■□□□□ 0.8
VCPP55072 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
VCPP55072 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCPP55072 TEX21P-204ENST00000641479 1693 ntBASIC20.07■□□□□ 0.8
VCPP55072 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VCPP55072 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VCPP55072 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
VCPP55072 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCPP55072 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCPP55072 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VCPP55072 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms