Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.37■□□□□ 0.69
NEK3P51956 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NEK3P51956 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.37■□□□□ 0.69
NEK3P51956 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.37■□□□□ 0.69
NEK3P51956 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NEK3P51956 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
NEK3P51956 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.37■□□□□ 0.69
NEK3P51956 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.37■□□□□ 0.69
NEK3P51956 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.37■□□□□ 0.69
NEK3P51956 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
NEK3P51956 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NEK3P51956 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
NEK3P51956 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
NEK3P51956 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.36■□□□□ 0.69
NEK3P51956 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
NEK3P51956 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.36■□□□□ 0.69
NEK3P51956 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.36■□□□□ 0.69
NEK3P51956 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.36■□□□□ 0.69
NEK3P51956 AC005363.2-201ENST00000618631 242 ntBASIC19.36■□□□□ 0.69
NEK3P51956 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
NEK3P51956 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
NEK3P51956 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.36■□□□□ 0.69
NEK3P51956 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
NEK3P51956 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.36■□□□□ 0.69
NEK3P51956 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NEK3P51956 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NEK3P51956 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.35■□□□□ 0.69
NEK3P51956 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NEK3P51956 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
NEK3P51956 AL031598.1-201ENST00000561511 1773 ntBASIC19.35■□□□□ 0.69
NEK3P51956 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.35■□□□□ 0.69
NEK3P51956 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
NEK3P51956 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NEK3P51956 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.35■□□□□ 0.69
NEK3P51956 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
NEK3P51956 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
NEK3P51956 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NEK3P51956 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.35■□□□□ 0.69
NEK3P51956 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.35■□□□□ 0.69
NEK3P51956 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
NEK3P51956 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.35■□□□□ 0.69
NEK3P51956 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.35■□□□□ 0.69
NEK3P51956 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
NEK3P51956 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.34■□□□□ 0.69
NEK3P51956 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.34■□□□□ 0.69
NEK3P51956 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 TSPY14P-201ENST00000303979 915 ntBASIC19.34■□□□□ 0.69
NEK3P51956 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 RCN1P1-201ENST00000400413 996 ntBASIC19.34■□□□□ 0.69
NEK3P51956 EGLN1P1-201ENST00000531623 762 ntBASIC19.34■□□□□ 0.69
NEK3P51956 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.34■□□□□ 0.69
NEK3P51956 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.34■□□□□ 0.69
NEK3P51956 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
NEK3P51956 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
NEK3P51956 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 AC093525.10-201ENST00000625130 1569 ntBASIC19.34■□□□□ 0.69
NEK3P51956 KRT8P41-201ENST00000533985 1514 ntBASIC19.34■□□□□ 0.69
NEK3P51956 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.34■□□□□ 0.69
NEK3P51956 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
NEK3P51956 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.34■□□□□ 0.69
NEK3P51956 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NEK3P51956 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms