Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CX3CR1P49238 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CX3CR1P49238 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CX3CR1P49238 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CX3CR1P49238 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.52■□□□□ 0.24
CX3CR1P49238 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.52■□□□□ 0.24
CX3CR1P49238 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CX3CR1P49238 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.52■□□□□ 0.24
CX3CR1P49238 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.52■□□□□ 0.24
CX3CR1P49238 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.52■□□□□ 0.24
CX3CR1P49238 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 AL353807.1-201ENST00000427475 662 ntBASIC16.52■□□□□ 0.24
CX3CR1P49238 KSR1P1-201ENST00000446298 240 ntBASIC16.52■□□□□ 0.24
CX3CR1P49238 RPS2P4-201ENST00000476944 856 ntBASIC16.52■□□□□ 0.24
CX3CR1P49238 RPPH1-201ENST00000516869 333 ntBASIC16.52■□□□□ 0.24
CX3CR1P49238 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC16.52■□□□□ 0.24
CX3CR1P49238 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.52■□□□□ 0.24
CX3CR1P49238 AL353708.3-201ENST00000610272 989 ntBASIC16.52■□□□□ 0.24
CX3CR1P49238 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.52■□□□□ 0.24
CX3CR1P49238 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CX3CR1P49238 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.52■□□□□ 0.24
CX3CR1P49238 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.52■□□□□ 0.24
CX3CR1P49238 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CX3CR1P49238 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CX3CR1P49238 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CX3CR1P49238 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CX3CR1P49238 KRT8P11-201ENST00000409686 1436 ntBASIC16.52■□□□□ 0.23
CX3CR1P49238 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CX3CR1P49238 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CX3CR1P49238 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 AC104581.1-202ENST00000635932 2618 ntBASIC16.51■□□□□ 0.23
CX3CR1P49238 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.51■□□□□ 0.23
CX3CR1P49238 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.51■□□□□ 0.23
CX3CR1P49238 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.51■□□□□ 0.23
CX3CR1P49238 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CX3CR1P49238 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
CX3CR1P49238 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.51■□□□□ 0.23
CX3CR1P49238 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CX3CR1P49238 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16.51■□□□□ 0.23
CX3CR1P49238 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.51■□□□□ 0.23
CX3CR1P49238 KRT16P1-201ENST00000399124 1418 ntBASIC16.51■□□□□ 0.23
CX3CR1P49238 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
CX3CR1P49238 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.51■□□□□ 0.23
CX3CR1P49238 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CX3CR1P49238 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.5■□□□□ 0.23
CX3CR1P49238 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CX3CR1P49238 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CX3CR1P49238 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
CX3CR1P49238 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CX3CR1P49238 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.5■□□□□ 0.23
CX3CR1P49238 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.5■□□□□ 0.23
CX3CR1P49238 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.5■□□□□ 0.23
CX3CR1P49238 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CX3CR1P49238 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.5■□□□□ 0.23
CX3CR1P49238 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CX3CR1P49238 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.5■□□□□ 0.23
CX3CR1P49238 FAM201B-201ENST00000458407 597 ntBASIC16.5■□□□□ 0.23
CX3CR1P49238 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.5■□□□□ 0.23
CX3CR1P49238 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.5■□□□□ 0.23
CX3CR1P49238 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CX3CR1P49238 PRSS44-201ENST00000515154 1146 ntBASIC16.5■□□□□ 0.23
CX3CR1P49238 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms