Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 INGX-201ENST00000359239 846 ntBASIC19.51■□□□□ 0.71
PTPN9P43378 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
PTPN9P43378 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.51■□□□□ 0.71
PTPN9P43378 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
PTPN9P43378 KRT18P41-201ENST00000518924 1277 ntBASIC19.51■□□□□ 0.71
PTPN9P43378 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.51■□□□□ 0.71
PTPN9P43378 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.5■□□□□ 0.71
PTPN9P43378 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.5■□□□□ 0.71
PTPN9P43378 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
PTPN9P43378 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
PTPN9P43378 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.5■□□□□ 0.71
PTPN9P43378 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.5■□□□□ 0.71
PTPN9P43378 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
PTPN9P43378 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.5■□□□□ 0.71
PTPN9P43378 WWOX-216ENST00000569818 525 ntBASIC19.5■□□□□ 0.71
PTPN9P43378 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PTPN9P43378 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
PTPN9P43378 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.5■□□□□ 0.71
PTPN9P43378 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 WIZP1-201ENST00000531444 2299 ntBASIC19.5■□□□□ 0.71
PTPN9P43378 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN9P43378 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PTPN9P43378 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.49■□□□□ 0.71
PTPN9P43378 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PTPN9P43378 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 AC087499.1-201ENST00000418141 1075 ntBASIC19.49■□□□□ 0.71
PTPN9P43378 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.49■□□□□ 0.71
PTPN9P43378 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 MYC-208ENST00000641036 567 ntBASIC19.49■□□□□ 0.71
PTPN9P43378 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN9P43378 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.49■□□□□ 0.71
PTPN9P43378 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PTPN9P43378 AC112777.1-201ENST00000540175 1423 ntBASIC19.49■□□□□ 0.71
PTPN9P43378 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PTPN9P43378 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PTPN9P43378 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
PTPN9P43378 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.49■□□□□ 0.71
PTPN9P43378 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.48■□□□□ 0.71
PTPN9P43378 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
PTPN9P43378 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.48■□□□□ 0.71
PTPN9P43378 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.48■□□□□ 0.71
PTPN9P43378 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.48■□□□□ 0.71
PTPN9P43378 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.48■□□□□ 0.71
PTPN9P43378 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.48■□□□□ 0.71
PTPN9P43378 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.48■□□□□ 0.71
PTPN9P43378 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
PTPN9P43378 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.48■□□□□ 0.71
PTPN9P43378 FAM87A-204ENST00000613235 858 ntBASIC19.48■□□□□ 0.71
PTPN9P43378 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
PTPN9P43378 CR769767.2-201ENST00000622735 460 ntBASIC19.48■□□□□ 0.71
PTPN9P43378 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.48■□□□□ 0.71
PTPN9P43378 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PTPN9P43378 AC036111.1-201ENST00000533973 1582 ntBASIC19.48■□□□□ 0.71
PTPN9P43378 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.48■□□□□ 0.71
PTPN9P43378 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN9P43378 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms