Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
MSX2P35548 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
MSX2P35548 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX2P35548 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
MSX2P35548 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX2P35548 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MSX2P35548 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
MSX2P35548 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.93■□□□□ 0.46
MSX2P35548 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 RPS2P52-201ENST00000469610 820 ntBASIC17.93■□□□□ 0.46
MSX2P35548 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.93■□□□□ 0.46
MSX2P35548 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.93■□□□□ 0.46
MSX2P35548 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX2P35548 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX2P35548 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.93■□□□□ 0.46
MSX2P35548 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.93■□□□□ 0.46
MSX2P35548 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX2P35548 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
MSX2P35548 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.92■□□□□ 0.46
MSX2P35548 AC007322.1-201ENST00000426983 750 ntBASIC17.92■□□□□ 0.46
MSX2P35548 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.92■□□□□ 0.46
MSX2P35548 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.92■□□□□ 0.46
MSX2P35548 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.92■□□□□ 0.46
MSX2P35548 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.92■□□□□ 0.46
MSX2P35548 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
MSX2P35548 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
MSX2P35548 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX2P35548 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
MSX2P35548 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
MSX2P35548 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
MSX2P35548 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
MSX2P35548 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.91■□□□□ 0.46
MSX2P35548 AC080080.1-201ENST00000625121 2420 ntBASIC17.91■□□□□ 0.46
MSX2P35548 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
MSX2P35548 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 AL512625.2-201ENST00000417533 625 ntBASIC17.91■□□□□ 0.46
MSX2P35548 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.91■□□□□ 0.46
MSX2P35548 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.91■□□□□ 0.46
MSX2P35548 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.91■□□□□ 0.46
MSX2P35548 AC005829.2-201ENST00000571422 1056 ntBASIC17.91■□□□□ 0.46
MSX2P35548 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
MSX2P35548 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
MSX2P35548 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.91■□□□□ 0.46
MSX2P35548 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSX2P35548 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms