Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 RPPH1-201ENST00000516869 333 ntBASIC14.33□□□□□ -0.12
HLA-DMBP28068 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 RN7SL471P-201ENST00000580476 299 ntBASIC14.33□□□□□ -0.12
HLA-DMBP28068 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 AC004264.1-201ENST00000608354 794 ntBASIC14.33□□□□□ -0.12
HLA-DMBP28068 AL359736.2-201ENST00000621992 437 ntBASIC14.33□□□□□ -0.12
HLA-DMBP28068 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 HTR7P1-202ENST00000624664 4411 ntBASIC14.33□□□□□ -0.12
HLA-DMBP28068 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DMBP28068 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 KRASP1-201ENST00000407852 552 ntBASIC14.32□□□□□ -0.12
HLA-DMBP28068 TSPY21P-201ENST00000433481 731 ntBASIC14.32□□□□□ -0.12
HLA-DMBP28068 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 UBE2SP1-201ENST00000450587 669 ntBASIC14.32□□□□□ -0.12
HLA-DMBP28068 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 RNF121-214ENST00000533380 870 ntTSL 3 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DMBP28068 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DMBP28068 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 KRT8P41-201ENST00000533985 1514 ntBASIC14.31□□□□□ -0.12
HLA-DMBP28068 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms