Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC22.63■■□□□ 1.21
COL1A1P02452 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
COL1A1P02452 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.62■■□□□ 1.21
COL1A1P02452 AL391807.1-203ENST00000604392 2365 ntBASIC22.62■■□□□ 1.21
COL1A1P02452 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC22.62■■□□□ 1.21
COL1A1P02452 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC22.62■■□□□ 1.21
COL1A1P02452 RN7SL510P-201ENST00000581311 263 ntBASIC22.62■■□□□ 1.21
COL1A1P02452 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC22.62■■□□□ 1.21
COL1A1P02452 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC22.62■■□□□ 1.21
COL1A1P02452 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL1A1P02452 HEIH-201ENST00000623091 1652 ntBASIC22.61■■□□□ 1.21
COL1A1P02452 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC22.61■■□□□ 1.21
COL1A1P02452 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC22.61■■□□□ 1.21
COL1A1P02452 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 GRAMD4P1-201ENST00000435181 1110 ntBASIC22.61■■□□□ 1.21
COL1A1P02452 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC22.61■■□□□ 1.21
COL1A1P02452 AC092329.2-201ENST00000598402 547 ntBASIC22.61■■□□□ 1.21
COL1A1P02452 AL121672.3-201ENST00000608644 468 ntBASIC22.61■■□□□ 1.21
COL1A1P02452 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
COL1A1P02452 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 AL162741.1-201ENST00000565563 1558 ntBASIC22.61■■□□□ 1.21
COL1A1P02452 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.61■■□□□ 1.21
COL1A1P02452 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
COL1A1P02452 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.61■■□□□ 1.21
COL1A1P02452 AC006333.2-201ENST00000607957 2099 ntBASIC22.61■■□□□ 1.21
COL1A1P02452 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
COL1A1P02452 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 AC004870.1-201ENST00000315132 882 ntBASIC22.6■■□□□ 1.21
COL1A1P02452 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC22.6■■□□□ 1.21
COL1A1P02452 TSSC2-201ENST00000450217 709 ntBASIC22.6■■□□□ 1.21
COL1A1P02452 MIR3180-1-201ENST00000580374 94 ntBASIC22.6■■□□□ 1.21
COL1A1P02452 MIR3180-3-201ENST00000584616 94 ntBASIC22.6■■□□□ 1.21
COL1A1P02452 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC22.6■■□□□ 1.21
COL1A1P02452 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC22.6■■□□□ 1.21
COL1A1P02452 AC093525.10-201ENST00000625130 1569 ntBASIC22.6■■□□□ 1.21
COL1A1P02452 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC22.6■■□□□ 1.21
COL1A1P02452 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 FAAHP1-202ENST00000446499 1238 ntBASIC22.6■■□□□ 1.21
COL1A1P02452 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC22.6■■□□□ 1.21
COL1A1P02452 SKP2-204ENST00000508514 821 ntTSL 3 BASIC22.6■■□□□ 1.21
COL1A1P02452 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC22.6■■□□□ 1.21
COL1A1P02452 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.6■■□□□ 1.21
COL1A1P02452 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL1A1P02452 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC22.59■■□□□ 1.21
COL1A1P02452 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
COL1A1P02452 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.59■■□□□ 1.21
COL1A1P02452 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
COL1A1P02452 Z98044.1-201ENST00000632503 1764 ntBASIC22.59■■□□□ 1.21
COL1A1P02452 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
COL1A1P02452 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC22.59■■□□□ 1.21
COL1A1P02452 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
COL1A1P02452 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 FDX1P1-201ENST00000449115 551 ntBASIC22.59■■□□□ 1.21
COL1A1P02452 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC22.59■■□□□ 1.21
COL1A1P02452 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 RNF126P1-202ENST00000569893 925 ntBASIC22.59■■□□□ 1.21
COL1A1P02452 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC22.59■■□□□ 1.21
COL1A1P02452 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC22.59■■□□□ 1.21
COL1A1P02452 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC22.59■■□□□ 1.21
COL1A1P02452 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
COL1A1P02452 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
COL1A1P02452 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL1A1P02452 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC22.58■■□□□ 1.21
COL1A1P02452 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
COL1A1P02452 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL1A1P02452 NFYC-AS1-201ENST00000606277 1687 ntBASIC22.58■■□□□ 1.21
COL1A1P02452 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms