Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD1O75127 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD1O75127 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD1O75127 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD1O75127 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD1O75127 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC24.11■■□□□ 1.45
PTCD1O75127 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC24.11■■□□□ 1.45
PTCD1O75127 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD1O75127 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
PTCD1O75127 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 ENSA-205ENST00000361532 792 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 ELP6-205ENST00000439305 880 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 AC009078.2-202ENST00000463353 338 ntBASIC24.1■■□□□ 1.45
PTCD1O75127 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 FOSL1P1-201ENST00000511041 816 ntBASIC24.1■■□□□ 1.45
PTCD1O75127 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.1■■□□□ 1.45
PTCD1O75127 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC24.1■■□□□ 1.45
PTCD1O75127 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
PTCD1O75127 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD1O75127 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC24.09■■□□□ 1.45
PTCD1O75127 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
PTCD1O75127 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC24.09■■□□□ 1.45
PTCD1O75127 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC24.09■■□□□ 1.45
PTCD1O75127 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC24.09■■□□□ 1.45
PTCD1O75127 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC24.09■■□□□ 1.45
PTCD1O75127 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC24.09■■□□□ 1.45
PTCD1O75127 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD1O75127 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC24.09■■□□□ 1.45
PTCD1O75127 HOXB1-202ENST00000577092 1414 ntBASIC24.09■■□□□ 1.45
PTCD1O75127 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.09■■□□□ 1.45
PTCD1O75127 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC24.08■■□□□ 1.45
PTCD1O75127 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PTCD1O75127 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC24.08■■□□□ 1.45
PTCD1O75127 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC24.08■■□□□ 1.45
PTCD1O75127 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
PTCD1O75127 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.08■■□□□ 1.45
PTCD1O75127 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC24.08■■□□□ 1.45
PTCD1O75127 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC24.08■■□□□ 1.45
PTCD1O75127 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC24.08■■□□□ 1.45
PTCD1O75127 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC24.08■■□□□ 1.45
PTCD1O75127 AC005332.3-201ENST00000589904 676 ntBASIC24.08■■□□□ 1.45
PTCD1O75127 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC24.08■■□□□ 1.45
PTCD1O75127 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC24.08■■□□□ 1.45
PTCD1O75127 AL031008.1-201ENST00000619963 541 ntBASIC24.08■■□□□ 1.45
PTCD1O75127 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC24.08■■□□□ 1.45
PTCD1O75127 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PTCD1O75127 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
PTCD1O75127 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PTCD1O75127 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
PTCD1O75127 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PTCD1O75127 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC24.08■■□□□ 1.44
PTCD1O75127 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
PTCD1O75127 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
PTCD1O75127 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 MIR564-202ENST00000385049 94 ntBASIC24.07■■□□□ 1.44
PTCD1O75127 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC24.07■■□□□ 1.44
PTCD1O75127 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC24.07■■□□□ 1.44
PTCD1O75127 AC091304.2-201ENST00000564639 760 ntBASIC24.07■■□□□ 1.44
PTCD1O75127 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC24.07■■□□□ 1.44
PTCD1O75127 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
PTCD1O75127 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms