Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.83■□□□□ 0.6
SHOX2O60902 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.83■□□□□ 0.6
SHOX2O60902 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.83■□□□□ 0.6
SHOX2O60902 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SHOX2O60902 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.83■□□□□ 0.6
SHOX2O60902 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.83■□□□□ 0.6
SHOX2O60902 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SHOX2O60902 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.82■□□□□ 0.6
SHOX2O60902 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.82■□□□□ 0.6
SHOX2O60902 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SHOX2O60902 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.82■□□□□ 0.6
SHOX2O60902 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 AC005837.3-201ENST00000612163 286 ntBASIC18.82■□□□□ 0.6
SHOX2O60902 AC105020.6-201ENST00000621523 1217 ntBASIC18.82■□□□□ 0.6
SHOX2O60902 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 HEIH-201ENST00000623091 1652 ntBASIC18.82■□□□□ 0.6
SHOX2O60902 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHOX2O60902 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.81■□□□□ 0.6
SHOX2O60902 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
SHOX2O60902 AC006116.8-202ENST00000587620 1550 ntBASIC18.81■□□□□ 0.6
SHOX2O60902 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SHOX2O60902 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.81■□□□□ 0.6
SHOX2O60902 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SHOX2O60902 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.81■□□□□ 0.6
SHOX2O60902 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.81■□□□□ 0.6
SHOX2O60902 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
SHOX2O60902 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.81■□□□□ 0.6
SHOX2O60902 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.81■□□□□ 0.6
SHOX2O60902 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.81■□□□□ 0.6
SHOX2O60902 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.81■□□□□ 0.6
SHOX2O60902 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHOX2O60902 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 HTR7P1-202ENST00000624664 4411 ntBASIC18.8■□□□□ 0.6
SHOX2O60902 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
SHOX2O60902 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.8■□□□□ 0.6
SHOX2O60902 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SHOX2O60902 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.8■□□□□ 0.6
SHOX2O60902 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.8■□□□□ 0.6
SHOX2O60902 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SHOX2O60902 AC027612.3-201ENST00000413684 1047 ntBASIC18.8■□□□□ 0.6
SHOX2O60902 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.8■□□□□ 0.6
SHOX2O60902 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SHOX2O60902 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
SHOX2O60902 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.8■□□□□ 0.6
SHOX2O60902 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.8■□□□□ 0.6
SHOX2O60902 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SHOX2O60902 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHOX2O60902 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.8■□□□□ 0.6
SHOX2O60902 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.8■□□□□ 0.6
SHOX2O60902 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SHOX2O60902 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SHOX2O60902 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SHOX2O60902 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.79■□□□□ 0.6
SHOX2O60902 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.79■□□□□ 0.6
SHOX2O60902 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.79■□□□□ 0.6
SHOX2O60902 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SHOX2O60902 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms