Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CBX4O00257 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.19■□□□□ 0.66
CBX4O00257 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CBX4O00257 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX4O00257 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CBX4O00257 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX4O00257 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 CR769767.2-201ENST00000622735 460 ntBASIC19.19■□□□□ 0.66
CBX4O00257 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CBX4O00257 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX4O00257 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CBX4O00257 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 AC036111.1-201ENST00000533973 1582 ntBASIC19.19■□□□□ 0.66
CBX4O00257 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.18■□□□□ 0.66
CBX4O00257 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CBX4O00257 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.18■□□□□ 0.66
CBX4O00257 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.18■□□□□ 0.66
CBX4O00257 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.18■□□□□ 0.66
CBX4O00257 BX664615.1-201ENST00000443558 458 ntBASIC19.18■□□□□ 0.66
CBX4O00257 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.18■□□□□ 0.66
CBX4O00257 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.18■□□□□ 0.66
CBX4O00257 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.18■□□□□ 0.66
CBX4O00257 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.18■□□□□ 0.66
CBX4O00257 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.18■□□□□ 0.66
CBX4O00257 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CBX4O00257 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
CBX4O00257 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CBX4O00257 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
CBX4O00257 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CBX4O00257 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.18■□□□□ 0.66
CBX4O00257 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 KRT8P32-201ENST00000512863 1461 ntBASIC19.17■□□□□ 0.66
CBX4O00257 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.17■□□□□ 0.66
CBX4O00257 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.17■□□□□ 0.66
CBX4O00257 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
CBX4O00257 AC009947.2-201ENST00000444014 672 ntBASIC19.17■□□□□ 0.66
CBX4O00257 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.17■□□□□ 0.66
CBX4O00257 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.17■□□□□ 0.66
CBX4O00257 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.17■□□□□ 0.66
CBX4O00257 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
CBX4O00257 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
CBX4O00257 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.17■□□□□ 0.66
CBX4O00257 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.17■□□□□ 0.66
CBX4O00257 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.17■□□□□ 0.66
CBX4O00257 AC008556.1-201ENST00000610908 2040 ntBASIC19.17■□□□□ 0.66
CBX4O00257 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CBX4O00257 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CBX4O00257 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.16■□□□□ 0.66
CBX4O00257 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms