Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 VENTXP5-201ENST00000523979 775 ntBASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 AC024243.1-201ENST00000609234 778 ntBASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 AC083849.1-201ENST00000615227 514 ntBASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 HCG11-201ENST00000411553 5696 ntBASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 RCC2P3-201ENST00000418112 1537 ntBASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 AC034232.1-201ENST00000506026 1064 ntBASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 FAM86EP-206ENST00000510506 987 ntBASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 AC005332.1-201ENST00000577698 1310 ntBASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV40A0A0B4J280 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 LINC01311-201ENST00000565162 1445 ntBASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AC093458.2-201ENST00000623150 629 ntBASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV40A0A0B4J280 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms