Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 AC104819.1-201ENST00000504587 486 ntBASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 AC090616.6-201ENST00000582640 721 ntBASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 Z83836.1-201ENST00000624605 1642 ntBASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC187A0A096LP49 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 PVRIG2P-201ENST00000435460 978 ntBASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 AP003733.1-201ENST00000491725 852 ntBASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 FOSL1P1-201ENST00000511041 816 ntBASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 AL031008.1-201ENST00000619963 541 ntBASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC187A0A096LP49 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 AL512353.2-201ENST00000448759 1962 ntBASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 AL160237.2-201ENST00000556165 472 ntBASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC187A0A096LP49 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 Z82202.1-201ENST00000623446 1880 ntBASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC187A0A096LP49 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 AC009078.2-202ENST00000463353 338 ntBASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 KRT18P31-201ENST00000506277 1292 ntBASIC17.76■□□□□ 0.43
CCDC187A0A096LP49 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms