Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDP1Q9Y5B0 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 RASA4DP-201ENST00000460726 1199 ntBASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDP1Q9Y5B0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 KRT18P56-201ENST00000507275 550 ntBASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 AC069148.1-201ENST00000608741 768 ntBASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 AC083849.1-201ENST00000615227 514 ntBASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 AC116407.4-201ENST00000623319 1061 ntBASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDP1Q9Y5B0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms