Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC35.73■■■■□ 3.31
SHROOM4Q9ULL8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC35.73■■■■□ 3.31
SHROOM4Q9ULL8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 MIR574-201ENST00000385209 96 ntBASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 PNN-202ENST00000553331 656 ntTSL 3 BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 NME4-212ENST00000621774 904 ntTSL 3 BASIC35.72■■■■□ 3.31
SHROOM4Q9ULL8 AFG3L1P-217ENST00000557444 2447 ntBASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 FAM220CP-201ENST00000395253 831 ntBASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
SHROOM4Q9ULL8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 LINC00265-3P-201ENST00000447588 903 ntBASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC35.7■■■■□ 3.31
SHROOM4Q9ULL8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC35.7■■■■□ 3.3
SHROOM4Q9ULL8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.3
SHROOM4Q9ULL8 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 MIR662-201ENST00000384847 95 ntBASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC35.69■■■■□ 3.3
SHROOM4Q9ULL8 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 FOSL1P1-201ENST00000511041 816 ntBASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 AL353801.3-201ENST00000609898 542 ntBASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 TEX21P-204ENST00000641479 1693 ntBASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC35.68■■■■□ 3.3
SHROOM4Q9ULL8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 BAALC-202ENST00000306391 243 ntTSL 5 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 BAALC-204ENST00000330955 222 ntTSL 5 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 AL023284.2-201ENST00000405850 579 ntBASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 SAPCD2P3-201ENST00000455031 850 ntBASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 AC079602.3-201ENST00000623931 403 ntBASIC35.67■■■■□ 3.3
SHROOM4Q9ULL8 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms