Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 AC087388.1-201ENST00000571370 1112 ntBASIC21.63■■□□□ 1.05
DDX41Q9UJV9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 YBX1P2-201ENST00000489612 999 ntBASIC21.62■■□□□ 1.05
DDX41Q9UJV9 AP003041.3-201ENST00000527151 707 ntBASIC21.62■■□□□ 1.05
DDX41Q9UJV9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX41Q9UJV9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 RNF152P1-201ENST00000397754 604 ntBASIC21.61■■□□□ 1.05
DDX41Q9UJV9 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 COX11P1-201ENST00000489116 835 ntBASIC21.61■■□□□ 1.05
DDX41Q9UJV9 PRSS44-201ENST00000515154 1146 ntBASIC21.61■■□□□ 1.05
DDX41Q9UJV9 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX41Q9UJV9 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.6■■□□□ 1.05
DDX41Q9UJV9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 FAM8A6P-201ENST00000407496 1135 ntBASIC21.6■■□□□ 1.05
DDX41Q9UJV9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 TSPY5P-201ENST00000426936 936 ntBASIC21.6■■□□□ 1.05
DDX41Q9UJV9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX41Q9UJV9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 ZNF815P-204ENST00000434898 1737 ntBASIC21.59■■□□□ 1.05
DDX41Q9UJV9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 AL512604.3-201ENST00000569583 964 ntBASIC21.59■■□□□ 1.05
DDX41Q9UJV9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 AC011558.1-201ENST00000623459 338 ntBASIC21.59■■□□□ 1.05
DDX41Q9UJV9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.59■■□□□ 1.05
DDX41Q9UJV9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms