Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 KRT8P8-201ENST00000434750 1448 ntBASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 AC083906.2-201ENST00000511578 360 ntBASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 AC091874.3-201ENST00000512672 1195 ntBASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 AC092118.2-201ENST00000613495 667 ntBASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 NOC2LP1-202ENST00000452600 2235 ntBASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 WIZP1-201ENST00000531444 2299 ntBASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP1AQ9HD42 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 SDHAP1-207ENST00000440850 2000 ntBASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 CROCCP5-201ENST00000436658 830 ntBASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 ABHD17AP6-201ENST00000458502 1044 ntBASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 DLX3-202ENST00000512495 834 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CHMP1AQ9HD42 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms