Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 AL512604.3-201ENST00000569583 964 ntBASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.78■□□□□ 0.28
KIAA1549Q9HCM3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 AP000550.4-202ENST00000639755 178 ntBASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 TNXA-203ENST00000507684 2038 ntBASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KIAA1549Q9HCM3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 Z98044.1-201ENST00000632503 1764 ntBASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 SEC1P-202ENST00000473944 940 ntBASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.77■□□□□ 0.27
KIAA1549Q9HCM3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 AC093503.3-201ENST00000624917 2352 ntBASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 PCED1CP-201ENST00000419887 785 ntBASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 MIR3180-5-201ENST00000583743 153 ntBASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
KIAA1549Q9HCM3 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 AP000593.1-201ENST00000393668 712 ntBASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 RCC2P3-201ENST00000418112 1537 ntBASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KIAA1549Q9HCM3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms