Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 AL109659.2-201ENST00000606809 1674 ntBASIC20.55■□□□□ 0.88
HIPK3Q9H422 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 Z69720.1-201ENST00000601483 472 ntBASIC20.55■□□□□ 0.88
HIPK3Q9H422 AC120114.3-201ENST00000611923 658 ntBASIC20.55■□□□□ 0.88
HIPK3Q9H422 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.55■□□□□ 0.88
HIPK3Q9H422 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HIPK3Q9H422 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HIPK3Q9H422 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIPK3Q9H422 RNF165-205ENST00000588679 2904 ntBASIC20.54■□□□□ 0.88
HIPK3Q9H422 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 HLA-A-201ENST00000376802 1334 ntBASIC20.53■□□□□ 0.88
HIPK3Q9H422 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 HOXB1-202ENST00000577092 1414 ntBASIC20.53■□□□□ 0.88
HIPK3Q9H422 RCC2P3-201ENST00000418112 1537 ntBASIC20.53■□□□□ 0.88
HIPK3Q9H422 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.53■□□□□ 0.88
HIPK3Q9H422 AC008556.1-201ENST00000610908 2040 ntBASIC20.53■□□□□ 0.88
HIPK3Q9H422 AC099778.1-201ENST00000568593 1911 ntBASIC20.53■□□□□ 0.88
HIPK3Q9H422 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HIPK3Q9H422 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.52■□□□□ 0.88
HIPK3Q9H422 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.52■□□□□ 0.88
HIPK3Q9H422 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.52■□□□□ 0.88
HIPK3Q9H422 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
HIPK3Q9H422 BX640515.1-201ENST00000617215 977 ntBASIC20.52■□□□□ 0.88
HIPK3Q9H422 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HIPK3Q9H422 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HIPK3Q9H422 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HIPK3Q9H422 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.52■□□□□ 0.87
HIPK3Q9H422 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
HIPK3Q9H422 GABARAPL3-202ENST00000624044 1851 ntBASIC20.52■□□□□ 0.87
HIPK3Q9H422 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
HIPK3Q9H422 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HIPK3Q9H422 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HIPK3Q9H422 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HIPK3Q9H422 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HIPK3Q9H422 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms