Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 KRT18P57-201ENST00000443599 1254 ntBASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 AC008622.2-201ENST00000617006 1229 ntBASIC20.83■□□□□ 0.93
CCDC113Q9H0I3 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC113Q9H0I3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 AL137013.1-201ENST00000432946 1228 ntBASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 MIR4674-201ENST00000582457 87 ntBASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 IRX1P1-201ENST00000438849 1838 ntBASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC113Q9H0I3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 AC116562.4-201ENST00000641316 2276 ntBASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 TMPOP1-202ENST00000424642 1267 ntBASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 AL138966.2-201ENST00000621997 464 ntBASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC113Q9H0I3 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 FEM1AP3-201ENST00000403722 1741 ntBASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms