Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 AL645929.1-201ENST00000420084 975 ntBASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 KRT18P23-201ENST00000435622 1283 ntBASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 MIR3917-201ENST00000580971 93 ntBASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PAAF1Q9BRP4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 MIR564-202ENST00000385049 94 ntBASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 AL049812.1-201ENST00000432563 2267 ntBASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PAAF1Q9BRP4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PAAF1Q9BRP4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 HCG4P8-203ENST00000443049 980 ntBASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PAAF1Q9BRP4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 HLA-F-220ENST00000434407 884 ntBASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PAAF1Q9BRP4 AC068587.9-201ENST00000641814 219 ntBASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms