Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.33■□□□□ 0.53
LMX1AQ8TE12 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 DUSP5P1-201ENST00000441325 1139 ntBASIC18.33■□□□□ 0.52
LMX1AQ8TE12 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 AL121894.2-201ENST00000602977 491 ntBASIC18.33■□□□□ 0.52
LMX1AQ8TE12 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 AC008556.1-201ENST00000610908 2040 ntBASIC18.33■□□□□ 0.52
LMX1AQ8TE12 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LMX1AQ8TE12 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 AL109659.2-201ENST00000606809 1674 ntBASIC18.32■□□□□ 0.52
LMX1AQ8TE12 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 KRT18P23-201ENST00000435622 1283 ntBASIC18.32■□□□□ 0.52
LMX1AQ8TE12 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LMX1AQ8TE12 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 ATP5G2P1-201ENST00000433580 426 ntBASIC18.31■□□□□ 0.52
LMX1AQ8TE12 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 MIR3917-201ENST00000580971 93 ntBASIC18.31■□□□□ 0.52
LMX1AQ8TE12 AC011498.5-201ENST00000592027 486 ntBASIC18.31■□□□□ 0.52
LMX1AQ8TE12 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 AC092119.3-201ENST00000612618 583 ntBASIC18.31■□□□□ 0.52
LMX1AQ8TE12 AC079602.3-201ENST00000623931 403 ntBASIC18.31■□□□□ 0.52
LMX1AQ8TE12 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 FEM1AP3-201ENST00000403722 1741 ntBASIC18.31■□□□□ 0.52
LMX1AQ8TE12 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LMX1AQ8TE12 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms