Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
NKX2-3Q8TAU0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 AL023284.2-201ENST00000405850 579 ntBASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 AC069148.1-201ENST00000608741 768 ntBASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NKX2-3Q8TAU0 AL512353.2-201ENST00000448759 1962 ntBASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 AL512604.3-201ENST00000569583 964 ntBASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NKX2-3Q8TAU0 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
NKX2-3Q8TAU0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 ANKRD20A18P-201ENST00000359341 492 ntBASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AC116407.4-201ENST00000623319 1061 ntBASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AC141257.4-201ENST00000634557 245 ntBASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AC136944.6-201ENST00000634818 245 ntBASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NKX2-3Q8TAU0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 DAP-202ENST00000432074 1048 ntTSL 2 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 AL671277.2-201ENST00000458060 996 ntBASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 AC011558.1-201ENST00000623459 338 ntBASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
NKX2-3Q8TAU0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms