Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 IRX1P1-201ENST00000438849 1838 ntBASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
USHBP1Q8N6Y0 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
USHBP1Q8N6Y0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 Z83836.1-201ENST00000624605 1642 ntBASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 LINC00265-3P-201ENST00000447588 903 ntBASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 AP000867.3-201ENST00000524675 377 ntBASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 AC104390.1-201ENST00000555663 520 ntBASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 AC111152.3-201ENST00000569699 673 ntBASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 IFNL4P1-201ENST00000607083 540 ntBASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC24.79■■□□□ 1.56
USHBP1Q8N6Y0 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 FDX1P1-201ENST00000449115 551 ntBASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 PNN-202ENST00000553331 656 ntTSL 3 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC24.78■■□□□ 1.56
USHBP1Q8N6Y0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms