Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.92■□□□□ 0.94
CCDC60Q8IWA6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 RASA4DP-201ENST00000460726 1199 ntBASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 AC112497.1-201ENST00000624824 639 ntBASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CCDC60Q8IWA6 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 MIR564-202ENST00000385049 94 ntBASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC60Q8IWA6 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
CCDC60Q8IWA6 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC60Q8IWA6 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC60Q8IWA6 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.89■□□□□ 0.94
CCDC60Q8IWA6 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 SPDYE13P-201ENST00000445314 798 ntBASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC60Q8IWA6 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 LINC01311-201ENST00000565162 1445 ntBASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 AC005332.1-201ENST00000577698 1310 ntBASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC60Q8IWA6 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms