Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 ABALON-201ENST00000629058 1903 ntBASIC18.04■□□□□ 0.48
PPP4R4Q6NUP7 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PPP4R4Q6NUP7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 AC026366.1-201ENST00000488803 879 ntBASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PPP4R4Q6NUP7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PPP4R4Q6NUP7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PPP4R4Q6NUP7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PPP4R4Q6NUP7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
PPP4R4Q6NUP7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PPP4R4Q6NUP7 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PPP4R4Q6NUP7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.01■□□□□ 0.47
PPP4R4Q6NUP7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms