Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 KRT18P48-201ENST00000434763 852 ntBASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 KRT126P-201ENST00000549467 1181 ntBASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNFT1Q5M7Z0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNFT1Q5M7Z0 AC141586.3-201ENST00000562166 1838 ntBASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 KRT8P32-201ENST00000512863 1461 ntBASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 MIR3917-201ENST00000580971 93 ntBASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 CLEC4GP1-201ENST00000596555 870 ntBASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 AL121894.2-201ENST00000602977 491 ntBASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.93■□□□□ 0.3
RNFT1Q5M7Z0 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 ATP5G2P1-201ENST00000433580 426 ntBASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 HLA-F-220ENST00000434407 884 ntBASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.92■□□□□ 0.3
RNFT1Q5M7Z0 NPAP1P7-201ENST00000613027 823 ntBASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms