Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.16■□□□□ 0.5
PCDH1Q08174 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH1Q08174 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH1Q08174 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PCDH1Q08174 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH1Q08174 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PCDH1Q08174 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH1Q08174 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCDH1Q08174 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDH1Q08174 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.15■□□□□ 0.5
PCDH1Q08174 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDH1Q08174 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PCDH1Q08174 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDH1Q08174 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDH1Q08174 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDH1Q08174 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDH1Q08174 REXO1L10P-201ENST00000615707 1290 ntBASIC18.15■□□□□ 0.5
PCDH1Q08174 REXO1L12P-201ENST00000622156 912 ntBASIC18.15■□□□□ 0.5
PCDH1Q08174 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDH1Q08174 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDH1Q08174 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDH1Q08174 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH1Q08174 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PCDH1Q08174 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PCDH1Q08174 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PCDH1Q08174 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDH1Q08174 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PCDH1Q08174 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PCDH1Q08174 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.14■□□□□ 0.49
PCDH1Q08174 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.14■□□□□ 0.49
PCDH1Q08174 AP005242.2-201ENST00000580065 1175 ntBASIC18.14■□□□□ 0.49
PCDH1Q08174 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDH1Q08174 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PCDH1Q08174 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH1Q08174 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 AL109659.2-201ENST00000606809 1674 ntBASIC18.13■□□□□ 0.49
PCDH1Q08174 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.13■□□□□ 0.49
PCDH1Q08174 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.13■□□□□ 0.49
PCDH1Q08174 AC008550.1-201ENST00000511500 884 ntBASIC18.13■□□□□ 0.49
PCDH1Q08174 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.13■□□□□ 0.49
PCDH1Q08174 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.13■□□□□ 0.49
PCDH1Q08174 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDH1Q08174 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
PCDH1Q08174 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDH1Q08174 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms