Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CDH11P55287 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH11P55287 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CDH11P55287 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH11P55287 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH11P55287 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH11P55287 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH11P55287 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH11P55287 SNORA78-201ENST00000459373 127 ntBASIC17.25■□□□□ 0.35
CDH11P55287 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH11P55287 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH11P55287 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CDH11P55287 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH11P55287 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH11P55287 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH11P55287 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDH11P55287 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
CDH11P55287 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDH11P55287 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CDH11P55287 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CDH11P55287 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH11P55287 AC012618.2-201ENST00000428058 849 ntBASIC17.24■□□□□ 0.35
CDH11P55287 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH11P55287 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.24■□□□□ 0.35
CDH11P55287 MIR4497-201ENST00000583208 89 ntBASIC17.24■□□□□ 0.35
CDH11P55287 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CDH11P55287 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.24■□□□□ 0.35
CDH11P55287 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH11P55287 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 BICD1-207ENST00000551848 1962 ntBASIC17.24■□□□□ 0.35
CDH11P55287 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH11P55287 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH11P55287 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH11P55287 AC124283.5-201ENST00000624661 1809 ntBASIC17.24■□□□□ 0.35
CDH11P55287 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH11P55287 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CDH11P55287 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH11P55287 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.23■□□□□ 0.35
CDH11P55287 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH11P55287 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH11P55287 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH11P55287 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH11P55287 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH11P55287 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH11P55287 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH11P55287 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH11P55287 AL121906.2-201ENST00000621597 723 ntBASIC17.23■□□□□ 0.35
CDH11P55287 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.23■□□□□ 0.35
CDH11P55287 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH11P55287 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CDH11P55287 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH11P55287 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH11P55287 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 AL135905.2-201ENST00000584934 1404 ntBASIC17.22■□□□□ 0.35
CDH11P55287 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDH11P55287 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH11P55287 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CDH11P55287 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH11P55287 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms