Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 AC010327.4-202ENST00000591484 748 ntBASIC26.03■■□□□ 1.76
MSH6P52701 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC26.03■■□□□ 1.76
MSH6P52701 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
MSH6P52701 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC26.03■■□□□ 1.76
MSH6P52701 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC26.03■■□□□ 1.76
MSH6P52701 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC26.02■■□□□ 1.76
MSH6P52701 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC26.02■■□□□ 1.76
MSH6P52701 PPOX-214ENST00000535223 664 ntTSL 3 BASIC26.02■■□□□ 1.76
MSH6P52701 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
MSH6P52701 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
MSH6P52701 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC26.01■■□□□ 1.76
MSH6P52701 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC26.01■■□□□ 1.76
MSH6P52701 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC26.01■■□□□ 1.75
MSH6P52701 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC26.01■■□□□ 1.75
MSH6P52701 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC26.01■■□□□ 1.75
MSH6P52701 AC145285.3-201ENST00000564603 959 ntBASIC26.01■■□□□ 1.75
MSH6P52701 AC011840.4-201ENST00000578471 627 ntBASIC26.01■■□□□ 1.75
MSH6P52701 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC26.01■■□□□ 1.75
MSH6P52701 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC26.01■■□□□ 1.75
MSH6P52701 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC26.01■■□□□ 1.75
MSH6P52701 AC114341.1-201ENST00000618070 349 ntBASIC26.01■■□□□ 1.75
MSH6P52701 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
MSH6P52701 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
MSH6P52701 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC26■■□□□ 1.75
MSH6P52701 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
MSH6P52701 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC26■■□□□ 1.75
MSH6P52701 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC26■■□□□ 1.75
MSH6P52701 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC26■■□□□ 1.75
MSH6P52701 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
MSH6P52701 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
MSH6P52701 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
MSH6P52701 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC26■■□□□ 1.75
MSH6P52701 HIST2H3DP1-201ENST00000401004 416 ntBASIC26■■□□□ 1.75
MSH6P52701 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC26■■□□□ 1.75
MSH6P52701 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC26■■□□□ 1.75
MSH6P52701 MIR5100-201ENST00000579544 119 ntBASIC26■■□□□ 1.75
MSH6P52701 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC26■■□□□ 1.75
MSH6P52701 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC26■■□□□ 1.75
MSH6P52701 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
MSH6P52701 AL109659.2-201ENST00000606809 1674 ntBASIC26■■□□□ 1.75
MSH6P52701 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
MSH6P52701 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC26■■□□□ 1.75
MSH6P52701 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC26■■□□□ 1.75
MSH6P52701 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 USP48-205ENST00000421625 2818 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH6P52701 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.99■■□□□ 1.75
MSH6P52701 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 GPX1P2-201ENST00000429271 606 ntBASIC25.99■■□□□ 1.75
MSH6P52701 SCARNA2-201ENST00000458748 420 ntBASIC25.99■■□□□ 1.75
MSH6P52701 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 AC096582.2-201ENST00000510860 516 ntBASIC25.99■■□□□ 1.75
MSH6P52701 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 AC116407.3-201ENST00000623905 1129 ntBASIC25.99■■□□□ 1.75
MSH6P52701 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC25.99■■□□□ 1.75
MSH6P52701 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH6P52701 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH6P52701 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH6P52701 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH6P52701 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC25.98■■□□□ 1.75
MSH6P52701 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 RPSAP43-201ENST00000402237 625 ntBASIC25.98■■□□□ 1.75
MSH6P52701 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms