Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
MSX2P35548 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
MSX2P35548 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 AC009053.2-201ENST00000563701 2365 ntBASIC17.96■□□□□ 0.47
MSX2P35548 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.96■□□□□ 0.47
MSX2P35548 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
MSX2P35548 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
MSX2P35548 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.96■□□□□ 0.47
MSX2P35548 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.96■□□□□ 0.47
MSX2P35548 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.96■□□□□ 0.47
MSX2P35548 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.96■□□□□ 0.47
MSX2P35548 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.96■□□□□ 0.47
MSX2P35548 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.96■□□□□ 0.47
MSX2P35548 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
MSX2P35548 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
MSX2P35548 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.96■□□□□ 0.47
MSX2P35548 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.96■□□□□ 0.47
MSX2P35548 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.96■□□□□ 0.47
MSX2P35548 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
MSX2P35548 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX2P35548 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSX2P35548 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.96■□□□□ 0.46
MSX2P35548 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSX2P35548 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX2P35548 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX2P35548 MKRN4P-201ENST00000444706 1521 ntBASIC17.95■□□□□ 0.46
MSX2P35548 AP006587.1-201ENST00000534129 1502 ntBASIC17.95■□□□□ 0.46
MSX2P35548 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.95■□□□□ 0.46
MSX2P35548 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
MSX2P35548 AC016769.1-201ENST00000409132 1010 ntBASIC17.95■□□□□ 0.46
MSX2P35548 AC034268.1-201ENST00000441047 882 ntBASIC17.95■□□□□ 0.46
MSX2P35548 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 AC005181.1-201ENST00000604782 1256 ntBASIC17.95■□□□□ 0.46
MSX2P35548 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
MSX2P35548 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX2P35548 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX2P35548 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
MSX2P35548 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
MSX2P35548 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX2P35548 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
MSX2P35548 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX2P35548 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 AL390719.1-204ENST00000412397 1219 ntBASIC17.94■□□□□ 0.46
MSX2P35548 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX2P35548 AC006557.6-201ENST00000623071 864 ntBASIC17.94■□□□□ 0.46
MSX2P35548 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 AL162741.1-201ENST00000565563 1558 ntBASIC17.94■□□□□ 0.46
MSX2P35548 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX2P35548 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSX2P35548 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX2P35548 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
MSX2P35548 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms