Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
BDNFP23560 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
BDNFP23560 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.84■□□□□ 0.77
BDNFP23560 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.84■□□□□ 0.77
BDNFP23560 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.84■□□□□ 0.77
BDNFP23560 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 AL109659.2-201ENST00000606809 1674 ntBASIC19.84■□□□□ 0.77
BDNFP23560 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BDNFP23560 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BDNFP23560 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.83■□□□□ 0.77
BDNFP23560 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
BDNFP23560 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
BDNFP23560 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.83■□□□□ 0.77
BDNFP23560 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
BDNFP23560 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BDNFP23560 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.83■□□□□ 0.77
BDNFP23560 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BDNFP23560 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BDNFP23560 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
BDNFP23560 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.83■□□□□ 0.77
BDNFP23560 AL359075.1-203ENST00000462729 1002 ntBASIC19.83■□□□□ 0.77
BDNFP23560 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.83■□□□□ 0.77
BDNFP23560 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BDNFP23560 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
BDNFP23560 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.83■□□□□ 0.76
BDNFP23560 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
BDNFP23560 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.83■□□□□ 0.76
BDNFP23560 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
BDNFP23560 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.82■□□□□ 0.76
BDNFP23560 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BDNFP23560 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
BDNFP23560 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
BDNFP23560 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.82■□□□□ 0.76
BDNFP23560 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
BDNFP23560 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.82■□□□□ 0.76
BDNFP23560 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.82■□□□□ 0.76
BDNFP23560 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
BDNFP23560 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.82■□□□□ 0.76
BDNFP23560 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.82■□□□□ 0.76
BDNFP23560 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.82■□□□□ 0.76
BDNFP23560 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BDNFP23560 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
BDNFP23560 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BDNFP23560 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.82■□□□□ 0.76
BDNFP23560 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
BDNFP23560 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.81■□□□□ 0.76
BDNFP23560 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.81■□□□□ 0.76
BDNFP23560 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.81■□□□□ 0.76
BDNFP23560 KRT18P38-201ENST00000449496 1282 ntBASIC19.81■□□□□ 0.76
BDNFP23560 HOMER2P1-201ENST00000455653 964 ntBASIC19.81■□□□□ 0.76
BDNFP23560 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.81■□□□□ 0.76
BDNFP23560 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
BDNFP23560 AC024243.1-201ENST00000609234 778 ntBASIC19.81■□□□□ 0.76
BDNFP23560 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.81■□□□□ 0.76
BDNFP23560 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BDNFP23560 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
BDNFP23560 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
BDNFP23560 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.8■□□□□ 0.76
BDNFP23560 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.8■□□□□ 0.76
BDNFP23560 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.8■□□□□ 0.76
BDNFP23560 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.8■□□□□ 0.76
BDNFP23560 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms