Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
VPS4BO75351 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS4BO75351 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 AL390961.4-201ENST00000623958 2535 ntBASIC18.46■□□□□ 0.55
VPS4BO75351 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS4BO75351 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
VPS4BO75351 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VPS4BO75351 AC026471.5-201ENST00000615068 467 ntBASIC18.46■□□□□ 0.55
VPS4BO75351 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
VPS4BO75351 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS4BO75351 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VPS4BO75351 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS4BO75351 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VPS4BO75351 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS4BO75351 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
VPS4BO75351 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
VPS4BO75351 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VPS4BO75351 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS4BO75351 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
VPS4BO75351 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS4BO75351 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.45■□□□□ 0.54
VPS4BO75351 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.45■□□□□ 0.54
VPS4BO75351 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
VPS4BO75351 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
VPS4BO75351 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS4BO75351 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS4BO75351 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS4BO75351 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS4BO75351 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS4BO75351 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS4BO75351 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS4BO75351 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
VPS4BO75351 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
VPS4BO75351 AP003071.4-201ENST00000562276 1284 ntBASIC18.44■□□□□ 0.54
VPS4BO75351 AC092865.7-201ENST00000641832 219 ntBASIC18.44■□□□□ 0.54
VPS4BO75351 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VPS4BO75351 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS4BO75351 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.44■□□□□ 0.54
VPS4BO75351 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS4BO75351 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS4BO75351 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS4BO75351 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS4BO75351 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS4BO75351 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS4BO75351 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms