Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.68■■□□□ 1.38
NPHP1O15259 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC23.67■■□□□ 1.38
NPHP1O15259 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC23.67■■□□□ 1.38
NPHP1O15259 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC23.67■■□□□ 1.38
NPHP1O15259 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC23.67■■□□□ 1.38
NPHP1O15259 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 FAAHP1-202ENST00000446499 1238 ntBASIC23.67■■□□□ 1.38
NPHP1O15259 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.67■■□□□ 1.38
NPHP1O15259 MIR3180-1-201ENST00000580374 94 ntBASIC23.67■■□□□ 1.38
NPHP1O15259 MIR3180-3-201ENST00000584616 94 ntBASIC23.67■■□□□ 1.38
NPHP1O15259 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC23.67■■□□□ 1.38
NPHP1O15259 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC23.67■■□□□ 1.38
NPHP1O15259 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 AC112497.1-201ENST00000624824 639 ntBASIC23.67■■□□□ 1.38
NPHP1O15259 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 AL162377.1-201ENST00000618844 1793 ntBASIC23.67■■□□□ 1.38
NPHP1O15259 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
NPHP1O15259 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NPHP1O15259 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
NPHP1O15259 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 CHCHD2P8-201ENST00000429873 447 ntBASIC23.66■■□□□ 1.38
NPHP1O15259 AP002383.4-201ENST00000442518 975 ntBASIC23.66■■□□□ 1.38
NPHP1O15259 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC23.66■■□□□ 1.38
NPHP1O15259 AL157888.1-201ENST00000631930 593 ntBASIC23.66■■□□□ 1.38
NPHP1O15259 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
NPHP1O15259 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NPHP1O15259 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC23.65■■□□□ 1.38
NPHP1O15259 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
NPHP1O15259 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC23.65■■□□□ 1.38
NPHP1O15259 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
NPHP1O15259 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC23.65■■□□□ 1.38
NPHP1O15259 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC23.65■■□□□ 1.38
NPHP1O15259 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC23.65■■□□□ 1.38
NPHP1O15259 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC23.65■■□□□ 1.38
NPHP1O15259 AL136038.4-201ENST00000603606 1261 ntBASIC23.65■■□□□ 1.38
NPHP1O15259 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 GOLGA6L5P-202ENST00000515341 1828 ntBASIC23.65■■□□□ 1.38
NPHP1O15259 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
NPHP1O15259 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP1O15259 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP1O15259 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP1O15259 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP1O15259 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP1O15259 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
NPHP1O15259 TSPY22P-201ENST00000427496 604 ntBASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 SEC1P-202ENST00000473944 940 ntBASIC23.64■■□□□ 1.37
NPHP1O15259 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC23.64■■□□□ 1.37
NPHP1O15259 UNC93B7-201ENST00000509439 705 ntBASIC23.64■■□□□ 1.37
NPHP1O15259 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.64■■□□□ 1.37
NPHP1O15259 LINC01711-201ENST00000598340 967 ntBASIC23.64■■□□□ 1.37
NPHP1O15259 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
NPHP1O15259 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.64■■□□□ 1.37
NPHP1O15259 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 KRT8P10-201ENST00000450021 1447 ntBASIC23.64■■□□□ 1.37
NPHP1O15259 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC23.64■■□□□ 1.37
NPHP1O15259 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.64■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms