Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 AC067852.2-201ENST00000590513 2313 ntBASIC13.39□□□□□ -0.27
LINC01549A6NIU2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 COX20-201ENST00000366528 568 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 AF213884.3-201ENST00000563833 479 ntBASIC13.38□□□□□ -0.27
LINC01549A6NIU2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC01549A6NIU2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 AC013268.1-206ENST00000638368 961 ntBASIC13.37□□□□□ -0.27
LINC01549A6NIU2 AC112229.1-201ENST00000639295 961 ntBASIC13.37□□□□□ -0.27
LINC01549A6NIU2 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 MYCNOS-205ENST00000641950 531 ntBASIC13.37□□□□□ -0.27
LINC01549A6NIU2 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC01549A6NIU2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms