Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 AC091304.2-201ENST00000564639 760 ntBASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMD1Q9UGP4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 AC079781.3-201ENST00000449110 356 ntBASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 AP000867.3-201ENST00000524675 377 ntBASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 AC079602.3-201ENST00000623931 403 ntBASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMD1Q9UGP4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 TSPY22P-201ENST00000427496 604 ntBASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 LINC01711-201ENST00000598340 967 ntBASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 AL121772.3-201ENST00000610840 674 ntBASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 GPAT2P1-201ENST00000444924 1672 ntBASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LIMD1Q9UGP4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms