Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MKS1Q9NXB0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 AC135776.1-201ENST00000319817 2481 ntBASIC18.63■□□□□ 0.57
MKS1Q9NXB0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 AC006970.2-201ENST00000450065 779 ntBASIC18.63■□□□□ 0.57
MKS1Q9NXB0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.63■□□□□ 0.57
MKS1Q9NXB0 AC093677.2-201ENST00000600169 1863 ntBASIC18.63■□□□□ 0.57
MKS1Q9NXB0 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 Z85996.1-201ENST00000494644 937 ntBASIC18.62■□□□□ 0.57
MKS1Q9NXB0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 IKBKGP1-201ENST00000612193 1073 ntBASIC18.62■□□□□ 0.57
MKS1Q9NXB0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 KRT8P3-201ENST00000519669 1449 ntBASIC18.62■□□□□ 0.57
MKS1Q9NXB0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.62■□□□□ 0.57
MKS1Q9NXB0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 GNAS-203ENST00000306120 1878 ntBASIC18.61■□□□□ 0.57
MKS1Q9NXB0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
MKS1Q9NXB0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms