Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 MIR564-202ENST00000385049 94 ntBASIC22.26■■□□□ 1.15
DDX4Q9NQI0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 AC104390.1-201ENST00000555663 520 ntBASIC22.25■■□□□ 1.15
DDX4Q9NQI0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 FP475955.4-201ENST00000623131 1990 ntBASIC22.25■■□□□ 1.15
DDX4Q9NQI0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC22.25■■□□□ 1.15
DDX4Q9NQI0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 HOXB1-202ENST00000577092 1414 ntBASIC22.24■■□□□ 1.15
DDX4Q9NQI0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 MIR662-201ENST00000384847 95 ntBASIC22.24■■□□□ 1.15
DDX4Q9NQI0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 TSSC2-201ENST00000450217 709 ntBASIC22.24■■□□□ 1.15
DDX4Q9NQI0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 RNF126P1-202ENST00000569893 925 ntBASIC22.24■■□□□ 1.15
DDX4Q9NQI0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 AC010240.3-201ENST00000607688 395 ntBASIC22.24■■□□□ 1.15
DDX4Q9NQI0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX4Q9NQI0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AC007952.6-201ENST00000573168 2673 ntBASIC22.23■■□□□ 1.15
DDX4Q9NQI0 AC003957.1-201ENST00000625108 2673 ntBASIC22.23■■□□□ 1.15
DDX4Q9NQI0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX4Q9NQI0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 AL121672.3-201ENST00000608644 468 ntBASIC22.22■■□□□ 1.15
DDX4Q9NQI0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX4Q9NQI0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms