Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 BICD1-207ENST00000551848 1962 ntBASIC16.44■□□□□ 0.22
NKX3-1Q99801 AL354751.1-201ENST00000412768 1863 ntBASIC16.44■□□□□ 0.22
NKX3-1Q99801 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 AC067852.2-201ENST00000590513 2313 ntBASIC16.44■□□□□ 0.22
NKX3-1Q99801 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 AC126763.1-201ENST00000552015 2118 ntBASIC16.44■□□□□ 0.22
NKX3-1Q99801 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 FEM1AP3-201ENST00000403722 1741 ntBASIC16.44■□□□□ 0.22
NKX3-1Q99801 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NKX3-1Q99801 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX3-1Q99801 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 KRT18P16-201ENST00000510337 1294 ntBASIC16.43■□□□□ 0.22
NKX3-1Q99801 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX3-1Q99801 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
NKX3-1Q99801 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 HTR7P1-202ENST00000624664 4411 ntBASIC16.42■□□□□ 0.22
NKX3-1Q99801 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.42■□□□□ 0.22
NKX3-1Q99801 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 ABHD17AP1-201ENST00000358206 933 ntBASIC16.42■□□□□ 0.22
NKX3-1Q99801 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms