Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FAM197Y3-203ENST00000618346 717 ntBASIC18.65■□□□□ 0.58
VPS13AQ96RL7 AC116407.3-201ENST00000623905 1129 ntBASIC18.65■□□□□ 0.58
VPS13AQ96RL7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 LINC00565-201ENST00000562710 2331 ntBASIC18.64■□□□□ 0.57
VPS13AQ96RL7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 AL512408.1-201ENST00000569378 2000 ntBASIC18.64■□□□□ 0.57
VPS13AQ96RL7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 AC090616.6-201ENST00000582640 721 ntBASIC18.64■□□□□ 0.57
VPS13AQ96RL7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 AC007375.3-201ENST00000600936 2314 ntBASIC18.64■□□□□ 0.57
VPS13AQ96RL7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13AQ96RL7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 FAM8A3P-201ENST00000427218 844 ntBASIC18.63■□□□□ 0.57
VPS13AQ96RL7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 AC073314.1-201ENST00000568729 2216 ntBASIC18.63■□□□□ 0.57
VPS13AQ96RL7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS13AQ96RL7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 AL137060.1-201ENST00000618151 2648 ntBASIC18.62■□□□□ 0.57
VPS13AQ96RL7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 AL390719.2-201ENST00000606993 987 ntBASIC18.62■□□□□ 0.57
VPS13AQ96RL7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 AC034105.1-201ENST00000563488 319 ntBASIC18.62■□□□□ 0.57
VPS13AQ96RL7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13AQ96RL7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 MED15P5-201ENST00000423150 992 ntBASIC18.61■□□□□ 0.57
VPS13AQ96RL7 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms