Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLHC1Q8NHS4 KRT8P41-201ENST00000533985 1514 ntBASIC18.13■□□□□ 0.49
CLHC1Q8NHS4 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLHC1Q8NHS4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CLHC1Q8NHS4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CLHC1Q8NHS4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 AC090340.1-201ENST00000620778 4980 ntBASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CLHC1Q8NHS4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLHC1Q8NHS4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 KRT16P5-201ENST00000455284 522 ntBASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 AC124016.1-201ENST00000609552 612 ntBASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 HTR7P1-202ENST00000624664 4411 ntBASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.09■□□□□ 0.49
CLHC1Q8NHS4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLHC1Q8NHS4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms