Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
KRT40Q6A162 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.84■■□□□ 1.09
KRT40Q6A162 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.84■■□□□ 1.09
KRT40Q6A162 AC116562.2-201ENST00000507042 360 ntBASIC21.84■■□□□ 1.09
KRT40Q6A162 NUDT16P1-203ENST00000513809 620 ntBASIC21.84■■□□□ 1.09
KRT40Q6A162 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.84■■□□□ 1.09
KRT40Q6A162 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.84■■□□□ 1.09
KRT40Q6A162 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.84■■□□□ 1.09
KRT40Q6A162 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.84■■□□□ 1.09
KRT40Q6A162 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.84■■□□□ 1.09
KRT40Q6A162 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.84■■□□□ 1.09
KRT40Q6A162 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT40Q6A162 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.83■■□□□ 1.09
KRT40Q6A162 RNF165-205ENST00000588679 2904 ntBASIC21.83■■□□□ 1.09
KRT40Q6A162 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
KRT40Q6A162 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
KRT40Q6A162 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.83■■□□□ 1.09
KRT40Q6A162 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
KRT40Q6A162 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.83■■□□□ 1.09
KRT40Q6A162 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
KRT40Q6A162 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
KRT40Q6A162 AL355355.2-201ENST00000442321 338 ntBASIC21.83■■□□□ 1.09
KRT40Q6A162 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.83■■□□□ 1.09
KRT40Q6A162 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.83■■□□□ 1.09
KRT40Q6A162 AP000692.2-201ENST00000608391 879 ntBASIC21.83■■□□□ 1.09
KRT40Q6A162 AC005363.2-201ENST00000618631 242 ntBASIC21.83■■□□□ 1.09
KRT40Q6A162 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
KRT40Q6A162 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.83■■□□□ 1.09
KRT40Q6A162 Z98044.1-201ENST00000632503 1764 ntBASIC21.83■■□□□ 1.09
KRT40Q6A162 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
KRT40Q6A162 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.83■■□□□ 1.09
KRT40Q6A162 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
KRT40Q6A162 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.83■■□□□ 1.08
KRT40Q6A162 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
KRT40Q6A162 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.82■■□□□ 1.08
KRT40Q6A162 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
KRT40Q6A162 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
KRT40Q6A162 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
KRT40Q6A162 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
KRT40Q6A162 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.82■■□□□ 1.08
KRT40Q6A162 AC145285.6-201ENST00000604632 637 ntBASIC21.82■■□□□ 1.08
KRT40Q6A162 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
KRT40Q6A162 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
KRT40Q6A162 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.81■■□□□ 1.08
KRT40Q6A162 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
KRT40Q6A162 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT40Q6A162 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT40Q6A162 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT40Q6A162 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT40Q6A162 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
KRT40Q6A162 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.81■■□□□ 1.08
KRT40Q6A162 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.81■■□□□ 1.08
KRT40Q6A162 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
KRT40Q6A162 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT40Q6A162 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT40Q6A162 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT40Q6A162 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
KRT40Q6A162 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
KRT40Q6A162 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT40Q6A162 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.8■■□□□ 1.08
KRT40Q6A162 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT40Q6A162 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
KRT40Q6A162 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT40Q6A162 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 KRT8P3-201ENST00000519669 1449 ntBASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms