Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 CR392000.1-201ENST00000624770 1228 ntBASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 KRT8P11-201ENST00000409686 1436 ntBASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 ITM2C-210ENST00000620962 501 ntBASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 AL359736.2-201ENST00000621992 437 ntBASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 KRT16P1-201ENST00000399124 1418 ntBASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC40Q4G0X9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 WIZP1-201ENST00000531444 2299 ntBASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC40Q4G0X9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 RCC2P6-201ENST00000526625 1557 ntBASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 RARRES2P10-201ENST00000564312 460 ntBASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 AF186192.3-201ENST00000583427 947 ntBASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC40Q4G0X9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms