Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBA52P62987 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
UBA52P62987 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.26■□□□□ 0.19
UBA52P62987 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.26■□□□□ 0.19
UBA52P62987 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBA52P62987 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
UBA52P62987 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
UBA52P62987 BICD1-207ENST00000551848 1962 ntBASIC16.26■□□□□ 0.19
UBA52P62987 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
UBA52P62987 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBA52P62987 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.25■□□□□ 0.19
UBA52P62987 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.25■□□□□ 0.19
UBA52P62987 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.25■□□□□ 0.19
UBA52P62987 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.25■□□□□ 0.19
UBA52P62987 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.25■□□□□ 0.19
UBA52P62987 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.25■□□□□ 0.19
UBA52P62987 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 AC113410.3-201ENST00000623366 203 ntBASIC16.25■□□□□ 0.19
UBA52P62987 AC133561.5-201ENST00000635547 218 ntBASIC16.25■□□□□ 0.19
UBA52P62987 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
UBA52P62987 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.25■□□□□ 0.19
UBA52P62987 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBA52P62987 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
UBA52P62987 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.24■□□□□ 0.19
UBA52P62987 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.24■□□□□ 0.19
UBA52P62987 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.24■□□□□ 0.19
UBA52P62987 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 PRKY-204ENST00000533551 1019 ntBASIC16.24■□□□□ 0.19
UBA52P62987 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.24■□□□□ 0.19
UBA52P62987 RARRES2P10-201ENST00000564312 460 ntBASIC16.24■□□□□ 0.19
UBA52P62987 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.24■□□□□ 0.19
UBA52P62987 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.24■□□□□ 0.19
UBA52P62987 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.24■□□□□ 0.19
UBA52P62987 AL356652.1-201ENST00000615962 565 ntBASIC16.24■□□□□ 0.19
UBA52P62987 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBA52P62987 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
UBA52P62987 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
UBA52P62987 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
UBA52P62987 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.23■□□□□ 0.19
UBA52P62987 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.23■□□□□ 0.19
UBA52P62987 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
UBA52P62987 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.23■□□□□ 0.19
UBA52P62987 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.23■□□□□ 0.19
UBA52P62987 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
UBA52P62987 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
UBA52P62987 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
UBA52P62987 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
UBA52P62987 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms