Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.78■□□□□ 0.76
LIG3P49916 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 AC018553.1-201ENST00000616682 1458 ntBASIC19.78■□□□□ 0.76
LIG3P49916 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.78■□□□□ 0.76
LIG3P49916 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LIG3P49916 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.77■□□□□ 0.76
LIG3P49916 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LIG3P49916 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.77■□□□□ 0.76
LIG3P49916 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.77■□□□□ 0.76
LIG3P49916 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.77■□□□□ 0.76
LIG3P49916 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIG3P49916 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.77■□□□□ 0.76
LIG3P49916 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LIG3P49916 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIG3P49916 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIG3P49916 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
LIG3P49916 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LIG3P49916 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 HCG11-201ENST00000411553 5696 ntBASIC19.76■□□□□ 0.75
LIG3P49916 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
LIG3P49916 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
LIG3P49916 MIR718-201ENST00000390190 70 ntBASIC19.76■□□□□ 0.75
LIG3P49916 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG3P49916 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG3P49916 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.76■□□□□ 0.75
LIG3P49916 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG3P49916 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG3P49916 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LIG3P49916 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIG3P49916 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG3P49916 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.75■□□□□ 0.75
LIG3P49916 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 TFP1-202ENST00000475455 1573 ntBASIC19.75■□□□□ 0.75
LIG3P49916 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.75■□□□□ 0.75
LIG3P49916 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.75■□□□□ 0.75
LIG3P49916 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
LIG3P49916 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LIG3P49916 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.75■□□□□ 0.75
LIG3P49916 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.75■□□□□ 0.75
LIG3P49916 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LIG3P49916 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.75■□□□□ 0.75
LIG3P49916 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
LIG3P49916 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.75■□□□□ 0.75
LIG3P49916 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.75■□□□□ 0.75
LIG3P49916 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.75■□□□□ 0.75
LIG3P49916 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG3P49916 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.74■□□□□ 0.75
LIG3P49916 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
LIG3P49916 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
LIG3P49916 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms